Package: ATQ 0.2.3

ATQ: Alert Time Quality - Evaluating Timely Epidemic Metrics

Provides tools for evaluating timely epidemic detection models within school absenteeism-based surveillance systems. Introduces the concept of alert time quality as an evaluation metric. Includes functions to simulate populations, epidemics, and alert metrics associated with epidemic spread using population census data. The methods are based on research published in Vanderkruk et al. (2023) <doi:10.1186/s12889-023-15747-z> and Ward et al. (2019) <doi:10.1186/s12889-019-7521-7>.

Authors:Vinay Joshy [aut, cre, cph], Zeny Feng [aut, cph, ths], Lorna Deeth [aut, cph, ths], Justin Slater [aut, cph, ths], Kayla Vanderkruk [aut, com, ctb]

ATQ_0.2.3.tar.gz
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ATQ.pdf |ATQ.html✨
ATQ/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/vjoshy/atq_surveillance_package/issues

On CRAN:

13 exports 1 stars 1.34 score 34 dependencies 6 scripts 432 downloads

Last updated 30 days agofrom:a68e218842. Checks:OK: 7. Indexed: yes.

Exports:alarm_metricsalarm_plot_databest_modelcatchment_simcompile_epicreate_alarm_metrics_summaryelementary_popeval_metricsplot_single_epidemicsimulate_householdsssirsubpop_childrensubpop_noChildren

Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithrzoo